ARCHETYPE Specimen Preparation (openEHR-EHR-CLUSTER.specimen_preparation.v1)

ARCHETYPE IDopenEHR-EHR-CLUSTER.specimen_preparation.v1
ConceptSpecimen Preparation
DescriptionTo record details of laboratory specimen processing
UseGenerally used within a CLUSTER.specimen archetype.
PurposeTo record details of laboratory specimen processing
ReferencesDigital Imaging and Communications in Medicine (DICOM) Supplement 122: Specimen Module and Revised Pathology SOP Classes DICOM Standards Committee, Working Groups 26, Pathology IHE Anatomic Pathology Technical Framework Volume 1 (PAT TF-1) Revision 1.2 – Trial Implementation November 24, 2008
Copyright© openEHR Foundation
AuthorsAuthor name:
Organisation: NEHTA
Email: clinicalinfo@nehta.gov.au
Date originally authored: 13-Aug-2010
Other Details LanguageAuthor name:
Organisation: NEHTA
Email: clinicalinfo@nehta.gov.au
Date originally authored: 13-Aug-2010
OtherDetails Language Independent{references=Digital Imaging and Communications in Medicine (DICOM) Supplement 122: Specimen Module and Revised Pathology SOP Classes DICOM Standards Committee, Working Groups 26, Pathology IHE Anatomic Pathology Technical Framework Volume 1 (PAT TF-1) Revision 1.2 – Trial Implementation November 24, 2008, MD5-CAM-1.0.1=469EFAB49F635E54119CD7B4D140D064}
Keywordsspecimen, laboratory, sample, histopathology, histology, pathology
LifecycleApprovedCandidate
UID1.2.36.1.2001.1001.100.106.1.0
Language useden
Citeable Identifier1013.1.358
AllArchetype [runtimeNameConstraintForConceptName=null, archetypeConceptBinding=null, archetypeConceptDescription=To record details of laboratory specimen processing, archetypeConceptComment=null, otherContributors=Dr Ian McNicoll
Sam Heard Ocean Informatics
Heather Leslie Ocean Informatics
Koray Atalag University of Auckland
Eric Browne
Stephen Chu
Eleanor Royle
Ning Pan
Robert L'egan
Don Stewart
Stephen Royce, originalLanguage=en, translators=, subjectOfData=unconstrained, archetypeTranslationTree=null, topLevelToAshis={identities=[], activities=[], credentials=[], state=[], capabilities=[], items=[ResourceSimplifiedHierarchyItem [path=/items[at0077], code=at0077, itemType=CLUSTER, level=1, text=Processing Step, description=Used to support DICOM Supp 122 compatible specimen processing steps. Describes the single immediate processing step to go from parent to current specimen, comment=null, uncommonOntologyItems={detail_docref=data_groups/NEHTA-16314-Processing_Step-Data_Group.xml, dc_id=16314, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0077]/items[at0072], code=at0072, itemType=ELEMENT, level=2, text=DateTime of Processing Step, description=The data and time that the processing step occured., comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16315-DateTime_of_Processing_Step-Data_Element.xml, dc_id=16315, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0077]/items[at0085], code=at0085, itemType=ELEMENT, level=2, text=Parent Specimen Identifier, description=Unique identifier of the parent specimen, where the specimen is split into sub-samples., comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16187-Parent_Specimen_Identifier-Data_Element.xml, dc_id=16187, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0077]/items[at0071], code=at0071, itemType=ELEMENT, level=2, text=Processing Step Type, description=A DICOM compatible code describing a single processing step., comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16317-Processing_Step_Type-Data_Element.xml, dc_id=16317, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • Specimen collection [*]
  • Specimen receiving [*]
  • Sampling of tussue specimen [*]
  • Staining [*]
  • Specimen processing [*]
  • Specimen storage [*]
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0077]/items[at0074], code=at0074, itemType=ELEMENT, level=2, text=Specimen Processing Type, description=A physical process applied to the specimen e.g. block embedding, comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16318-Specimen_Processing_Type-Data_Element.xml, dc_id=16318, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0087], code=at0087, itemType=ELEMENT, level=1, text=Description, description=A general description of the specimen prepartion., comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16319-Description-Data_Element.xml, dc_id=16319, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086], code=at0086, itemType=CLUSTER, level=1, text=Specific Preparation, description=Details of the specific preparation carried out during a single processing step., comment=null, uncommonOntologyItems={detail_docref=data_groups/NEHTA-16320-Specific_Preparation-Data_Group.xml, dc_id=16320, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0073], code=at0073, itemType=ELEMENT, level=2, text=Sampling Method, description=The sampling method used. e.g dissection, block sampling, comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16321-Sampling_Method-Data_Element.xml, dc_id=16321, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0084], code=at0084, itemType=ELEMENT, level=2, text=Staining Method, description=Stain used for a microscopy slide., comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16322-Staining_Method-Data_Element.xml, dc_id=16322, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0075], code=at0075, itemType=ELEMENT, level=2, text=Embedding Medium, description=The medium within which the specimen is embedded e.g paraffin, comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16323-Embedding_Medium-Data_Element.xml, dc_id=16323, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0076], code=at0076, itemType=ELEMENT, level=2, text=Fixative, description=The fixative used, comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16324-Fixative-Data_Element.xml, dc_id=16324, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], events=[], provider=[], content=[], target=[], contacts=[], protocol=[], other_participations=[], relationships=[], ism_transition=[], description=[], source=[], data=[], context=[], details=[]}, topLevelItems={items=ResourceSimplifiedHierarchyItem [path=ROOT_/, code=at0000, itemType=CLUSTER, level=0, text=null, description=null, comment=null, uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=null, extendedValues=null]}, addHierarchyItemsTo=items, currentHierarchyItemsForAdding=[ResourceSimplifiedHierarchyItem [path=/items[at0077], code=at0077, itemType=CLUSTER, level=1, text=Processing Step, description=Used to support DICOM Supp 122 compatible specimen processing steps. Describes the single immediate processing step to go from parent to current specimen, comment=null, uncommonOntologyItems={detail_docref=data_groups/NEHTA-16314-Processing_Step-Data_Group.xml, dc_id=16314, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0077]/items[at0072], code=at0072, itemType=ELEMENT, level=2, text=DateTime of Processing Step, description=The data and time that the processing step occured., comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16315-DateTime_of_Processing_Step-Data_Element.xml, dc_id=16315, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0077]/items[at0085], code=at0085, itemType=ELEMENT, level=2, text=Parent Specimen Identifier, description=Unique identifier of the parent specimen, where the specimen is split into sub-samples., comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16187-Parent_Specimen_Identifier-Data_Element.xml, dc_id=16187, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0077]/items[at0071], code=at0071, itemType=ELEMENT, level=2, text=Processing Step Type, description=A DICOM compatible code describing a single processing step., comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16317-Processing_Step_Type-Data_Element.xml, dc_id=16317, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • Specimen collection [*]
  • Specimen receiving [*]
  • Sampling of tussue specimen [*]
  • Staining [*]
  • Specimen processing [*]
  • Specimen storage [*]
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0077]/items[at0074], code=at0074, itemType=ELEMENT, level=2, text=Specimen Processing Type, description=A physical process applied to the specimen e.g. block embedding, comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16318-Specimen_Processing_Type-Data_Element.xml, dc_id=16318, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0087], code=at0087, itemType=ELEMENT, level=1, text=Description, description=A general description of the specimen prepartion., comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16319-Description-Data_Element.xml, dc_id=16319, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086], code=at0086, itemType=CLUSTER, level=1, text=Specific Preparation, description=Details of the specific preparation carried out during a single processing step., comment=null, uncommonOntologyItems={detail_docref=data_groups/NEHTA-16320-Specific_Preparation-Data_Group.xml, dc_id=16320, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0073], code=at0073, itemType=ELEMENT, level=2, text=Sampling Method, description=The sampling method used. e.g dissection, block sampling, comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16321-Sampling_Method-Data_Element.xml, dc_id=16321, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0084], code=at0084, itemType=ELEMENT, level=2, text=Staining Method, description=Stain used for a microscopy slide., comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16322-Staining_Method-Data_Element.xml, dc_id=16322, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0075], code=at0075, itemType=ELEMENT, level=2, text=Embedding Medium, description=The medium within which the specimen is embedded e.g paraffin, comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16323-Embedding_Medium-Data_Element.xml, dc_id=16323, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0086]/items[at0076], code=at0076, itemType=ELEMENT, level=2, text=Fixative, description=The fixative used, comment=null, uncommonOntologyItems={detail_docref=data_elements/NEHTA-16324-Fixative-Data_Element.xml, dc_id=16324, version=1.0, status=Draft}, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null]], minIndents={}, termBindingRetrievalErrorMessage=null]